Cocoa Cupcakes with Ganache Filling
There’s something undeniably magical about biting into a rich, moist chocolate cupcake that hides a luscious ganache filling at its center. Our Cocoa Cupcakes with Ganache Filling bring together the perfect balance of deep cocoa flavor and silky chocolate cream. These cupcakes are a celebration of chocolate in every bite — tender crumb, intense cocoa, and a creamy surprise that elevates them beyond your typical cupcake. Whether you’re baking for a special occasion or just craving a chocolate treat, this recipe will quickly become a favorite in your kitchen.
Why Cooks Rave About It
Cocoa Cupcakes with Ganache Filling captivate bakers and chocolate lovers alike for several reasons:
- Decadent Texture: The cupcakes are moist from the hot water and butter, with a tender crumb that melts in your mouth.
- Intense Chocolate Flavor: Using cocoa powder and bittersweet chocolate chips creates a deep, rich chocolate taste that’s balanced, never overpowering.
- Surprise Center: The ganache filling adds a luxurious contrast to the fluffy cupcake, making every bite extra special.
- Simple Ingredients: With staple pantry items, you can whip up these cupcakes without hunting for specialty products.
- Versatile for Any Occasion: Whether for birthdays, holidays, or an everyday indulgence, these cupcakes fit the bill perfectly.
Your Shopping Guide
Before you dive into baking, make sure you gather the following ingredients for Cocoa Cupcakes with Ganache Filling:
- Flour: 1 ¾ cups of all-purpose flour provides the structure for the cupcakes.
- Cocoa Powder: ¾ cup unsweetened cocoa powder. Opt for Dutch-processed for a smoother, less acidic flavor or natural for a stronger chocolate kick.
- Baking Soda: 1 teaspoon to help the cupcakes rise nicely.
- Salt: ½ teaspoon enhances the chocolate flavor and balances sweetness.
- Sugar: 1 ¾ cups granulated sugar for that perfect sweetness.
- Butter: ½ cup (1 stick) unsalted butter, softened to room temperature for easy mixing.
- Eggs: 2 large eggs, which add richness and help bind the batter.
- Vanilla Extract: 1 teaspoon for a warm, aromatic note.
- Hot Water: 1 cup to bloom the cocoa powder and activate the baking soda, resulting in moist cupcakes.
- Bittersweet Chocolate Chips: 1 ½ cups to melt into the ganache filling, giving that creamy chocolate center.
Appliances & Accessories
To make your baking experience smooth and enjoyable, here’s what you’ll need:
- Mixing Bowls: At least two – one for dry ingredients and one for wet.
- Electric Mixer or Stand Mixer: For creaming butter and sugar and mixing batter evenly.
- Measuring Cups & Spoons: Accurate measurements make all the difference.
- Muffin Tin: A standard 12-cup muffin pan to bake the cupcakes.
- Cupcake Liners: To keep cupcakes from sticking and for easy cleanup.
- Spoon or Piping Bag: Useful for filling the cupcakes with ganache.
- Small Saucepan: To melt chocolate and prepare ganache.
- Cooling Rack: To cool cupcakes evenly without sogginess.
How to Prepare Cocoa Cupcakes with Ganache Filling

Step 1: Preheat and Prep
Preheat your oven to 350°F (175°C). Line a 12-cup muffin tin with cupcake liners to prepare for batter.
Step 2: Combine Dry Ingredients
In a medium bowl, sift together 1 ¾ cups flour, ¾ cup cocoa powder, 1 teaspoon baking soda, and ½ teaspoon salt. Sifting ensures no lumps and a smooth batter.
Step 3: Cream Butter and Sugar
Using an electric mixer, beat ½ cup softened butter and 1 ¾ cups sugar until light and fluffy, about 3-4 minutes. This incorporates air that helps create a tender crumb.
Step 4: Add Eggs and Vanilla
Beat in 2 eggs one at a time, followed by 1 teaspoon vanilla extract. Mix until fully incorporated.
Step 5: Alternate Adding Dry Ingredients and Hot Water
Add the dry ingredients in thirds, alternating with 1 cup hot water. Begin and end with the dry ingredients. Mix just until combined after each addition — overmixing can toughen cupcakes.
Step 6: Fill Cupcake Liners
Spoon batter evenly into prepared liners, filling each about ⅔ full. This gives the cupcakes room to rise without spilling over.
Step 7: Bake
Bake for 18-22 minutes, or until a toothpick inserted near the center comes out clean. Allow cupcakes to cool in the pan for 5 minutes, then transfer to a cooling rack.
Step 8: Make Ganache Filling
In a small saucepan, heat ¾ cup heavy cream over medium heat until it just begins to simmer. Remove from heat and add 1 ½ cups bittersweet chocolate chips. Let sit for 2 minutes, then whisk until smooth and glossy. Allow ganache to cool slightly but remain pourable.
Step 9: Fill the Cupcakes
Once cupcakes are cooled, use a small knife or cupcake corer to remove a small cone from the center of each cupcake. Fill the hollow with ganache using a spoon or piping bag. Replace the top if desired or leave open for a decadent surprise.
Fresh Takes Through the Year

- Winter Warmth: Add a pinch of cinnamon or chili powder to the batter for a subtle spicy kick.
- Spring Refresh: Top cupcakes with fresh raspberries or strawberries to brighten the chocolate flavor.
- Summer Celebration: Incorporate a splash of espresso or coffee in the ganache for a mocha twist.
- Autumn Comfort: Mix in pumpkin spice or swirl caramel sauce on top for seasonal flair.
Flavor Logic
The magic of Cocoa Cupcakes with Ganache Filling lies in balancing bitter, sweet, and creamy elements. The cocoa powder brings a robust chocolate bitterness that’s softened by the sugar and butter’s richness. Hot water helps release the cocoa’s full flavor while keeping the crumb moist. The ganache filling, made from bittersweet chocolate chips and cream, adds a silky texture and deep chocolate taste that contrasts with the light cupcake.
Vanilla extract rounds out the flavors, adding warmth and complexity. Salt enhances the chocolate and sweetness, making every bite satisfying. This interplay of ingredients creates a cupcake that’s indulgent yet balanced, perfect for chocolate lovers seeking more than a simple dessert.
How to Store & Reheat
Store your Cocoa Cupcakes with Ganache Filling in an airtight container at room temperature for up to 2 days. If your environment is warm, refrigerate them to keep the ganache from melting, but bring cupcakes to room temperature before serving for best texture and flavor.
To reheat, place cupcakes in a microwave-safe dish and warm for 10-15 seconds. Avoid overheating to prevent the ganache from becoming too runny or the cupcake drying out. You can also enjoy these cupcakes chilled for a firmer ganache bite.
Helpful Q&A
Can I use milk chocolate instead of bittersweet for the ganache?
Yes, you can substitute milk chocolate, but note that the ganache will be sweeter and less intense in chocolate flavor. Adjust sugar in the cupcake batter if you prefer a less sweet overall dessert.
How do I make the cupcakes dairy-free?
Replace butter with a plant-based margarine and use a non-dairy milk alternative in place of heavy cream for the ganache. Choose dairy-free chocolate chips to maintain that rich chocolate flavor.
Is it possible to freeze these cupcakes?
Absolutely! Freeze unfrosted cupcakes in a single layer on a baking sheet, then transfer to a freezer-safe container. Thaw overnight in the refrigerator before filling with ganache for best results.
Can I make the ganache filling ahead of time?
Yes, prepare ganache up to two days in advance and store in the refrigerator. Warm gently before filling your cupcakes to restore smooth consistency.
Cook This Next
- Chocolate Lava Cakes With Sea Salt Caramel – For an ooey-gooey chocolate dessert with a salted caramel twist.
- Double Chocolate Zucchini Bread With Walnuts – A moist and chocolatey bread that sneaks in veggies.
In Closing
Elevate your baking game with these Cocoa Cupcakes with Ganache Filling that marry deep chocolate flavor and creamy indulgence. Easy to make and impossible to resist, they’ll quickly become your go-to recipe for celebrations or just because. Bring a bit of chocolate luxury to your kitchen and enjoy the smiles that follow!
Indulge in every rich, velvety bite of these cupcakes, and don’t hesitate to experiment with the flavors and textures to make them uniquely yours. Happy baking!
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Cocoa Cupcakes with Ganache Filling
Ingredients
Cupcake Batter
- 1 3/4 cups all-purpose flour
- 3/4 cup unsweetened cocoa powder Dutch-processed or natural
- 1 teaspoon baking soda
- 1/2 teaspoon salt
- 1 3/4 cups granulated sugar
- 1/2 cup unsalted butter softened to room temperature
- 2 large eggs
- 1 teaspoon vanilla extract
- 1 cup hot water
Ganache Filling
- 3/4 cup heavy cream
- 1 1/2 cups bittersweet chocolate chips
Instructions
Preparation
- Preheat your oven to 350°F (175°C). Line a 12-cup muffin tin with cupcake liners.
- In a medium bowl, sift together 1 ¾ cups flour, ¾ cup cocoa powder, 1 teaspoon baking soda, and ½ teaspoon salt.
- Using an electric mixer, beat ½ cup softened butter and 1 ¾ cups sugar until light and fluffy, about 3-4 minutes.
- Beat in 2 eggs one at a time, then add 1 teaspoon vanilla extract and mix until incorporated.
- Add the dry ingredients in thirds, alternating with 1 cup hot water. Begin and end with dry ingredients. Mix just until combined after each addition.
- Spoon batter evenly into liners, filling each about ⅔ full.
- Bake for 18-22 minutes or until a toothpick comes out clean. Cool cupcakes in pan for 5 minutes, then transfer to a cooling rack.
Ganache Filling and Finishing
- In a small saucepan, heat ¾ cup heavy cream until it begins to simmer. Remove from heat, add 1 ½ cups bittersweet chocolate chips, let sit 2 minutes, then whisk until smooth. Let cool slightly.
- When cupcakes are cool, remove a small cone from the center of each and fill with ganache using a spoon or piping bag.
Equipment
- Mixing Bowls
- Electric mixer or stand mixer
- Measuring Cups & Spoons
- Muffin Tin
- Cupcake Liners
- Spoon or piping bag
- Small Saucepan
- Cooling Rack
Notes
- Store cupcakes in an airtight container at room temperature up to 2 days; refrigerate in warm climates and bring to room temperature before serving.
- Freeze unfrosted cupcakes and thaw before filling with ganache for make-ahead convenience.
- Customize by adding spices like cinnamon or coffee for seasonal flavor variations.

